Mitchell E Fane, PhD

Assistant Professor, Cancer Biology Program

Research Program

Cancer Signaling and Microenvironment

Our lab focuses on the differential changes that occur during aging in primary microenvironments vs metastatic niches. We have published in melanoma that aged dermal fibroblasts promote a slower-growing melanoma primary tumor compared to a younger microenvironment via secretion of sFRP2, which promotes invasion and dissemination of melanoma cells into the lung. However, aged lung fibroblasts secrete the related family member sFRP1, which acts inversely to sFRP2 by down-regulating dormancy promoting signaling pathways such as Wnt5A and AXL in melanoma cells to promote proliferation and reactivation from dormancy via the MER tyrosine kinase signaling pathway.
We are also focused on uncovering immune specific changes associated with aging in healthy and diseased metastatic niches such as the lung. We hypothesize that the aged lung is able to promote reactivation from dormancy by inducing an immunosuppressive niche via infiltration of Tregs, MDSCs and reducing effector T-cells and other cancer killing immune subtypes. This allows melanoma cells to proliferate unabated by the immune system to promote aggressive metastasis.
Our lab employs in vivo subcutaneous and tail-vein models in young (8 weeks) vs aged (over 52 weeks) mice to assess differences in metastatic outgrowth due to aging (A). Yumm 1.7 melanoma cells metastasize much more aggressively in the aged mouse lung relative to the young mouse lung (B). We are able to employ IHC, CyTOF, spatial transcriptomics and mass spectrometry to identify changes in immune cells and the ECM within these metastatic tumors. We also use young and aged healthy human lung and skin fibroblasts from patients and form 3d reconstructs in the presence of GFP melanoma cells. We can assess growth of these cells in the presence of fibroblasts and FACs sort melanoma and fibroblasts cultures and assess changes at transcriptomic and protein levels.

Educational Background

B.S., Biomedical Science (Honors Class I), University of Queensland, Brisbane, Australia
Doctor of Philosophy (University of Queensland, School of Biomedical Sciences)
- Research project: Investigating the role of the MITF-BRN2 expression axis in melanoma. Advisors: Dr Aaron Smith, Dr Richard Sturm

Memberships

International Pigment Cell Conference
Society of Melanoma Research
American Association of Cancer Research

Honors & Awards

Larry Grossman Award for Excellence in Postdoctoral Research, Johns Hopkins School of Public Health (2021)
Best abstract / Travel award for the Society for Melanoma Research, Virtual congress (2021)
Travel award and proffered talk at Annual AACR Scientific Meeting San Diego, California, United States of America (2020)
Proffered talk at Society of Melanoma Research Conference Utah, United States of America, 2019
Travel award and invited speaker at the GSA Annual Scientific Meeting Austin, Texas, United States of America (2019)
Wistar Institute International Travel Award, Summer, Manchester, United Kingdom, 2018
International travel award and proffered talk for AACR Cancer Dormancy and Residual Disease Conference, Montreal, Quebec, Canada, (2018)
International travel award for the Society for Melanoma Research, Boston, Massachusetts, United States of America, (2016)
SBMS international travel award UQ Brisbane, Australia (2016)
Best oral Presentation UQ SBMS Conference, Brisbane, Australia (2015)
Invited talk and travel award to the International Pigment Cell Conference, Singapore, (2014)
Best poster Presentation UQ SBMS Conference, Brisbane, Australia (2014)
APA PhD Scholarship UQ, Brisbane, Australia, (2013-2017)
SBMS Honors Bursary ($5000) UQ, Brisbane, Australia, (2012)
UQ Research Summer Scholarship ($2400), Brisbane, Australia, (2012, 2013)
Honors Bursary from the Asthma foundation ($5000), Brisbane, Australia, (2011)
4 Dean Commendations UQ, Brisbane, Australia, (2009-2011)

People

Kelly Countant

Post Doc Associate
Anastasiia Burtseva

Graduate Student
Jhon Pasamonte

Sci-Tech I
Pulkit Datt

PhD Student

Additional Staff

Past Lab Members:

Chris Price - Sci Tech I

Research Interests

Fane Lab – The role of aging on metastatic niche changes and cancer dormancy

Deciphering the intrinsic mechanisms of melanoma dormancy and reactivation in metastatic niches of young and aged patient and pre-clinical animal models.
Investigating fibroblast, ECM and immune-mediated changes associated with aging in healthy and cancer containing metastatic niches.
Defining differences in secretion of soluble proteins from dormant vs reactivated metastatic cancer cells and their role in cancer progression.
Uncovering the role of aging in promoting resistance to targeted and immune checkpoint therapies across differing metastatic niches.

Lab Overview

The research program within the Fane lab focuses on trying to understand the molecular mechanisms involved in the aging pre-metastatic niches and the role of these aged microenvironments in promoting cancer cell dormancy, metastatic reactivation and response to therapy.

We are interested in uncovering the evolution and intrinsic reprograming of fibroblasts, immune cells, endothelial cells and ECM remodeling associated with aging in the pre-metastatic niche of healthy and cancerous in-vitro and in-vivo models of metastasis, with validation using patient samples.

Our goal is to uncover novel signaling pathways associated with dormant and reactivated cancerous disease across various aging metastatic cancer models, with the hope of uncovering clinical markers for diagnosis of dormant disease and therapies for targeting these highly resistant and eventually aggressive cancer populations.

We also place a large emphasis on investigating the use of aged models across cancer. Many cancers show dramatic increases in incidence and mortality with respect to age, yet most pre-clinical animal models are done in younger mice or do not take account of age within patient samples. By deciphering the key differences between young and aged microenvironments in healthy and diseased models, we hope to create a paradigm shift in the field where age appropriate models are considered for various cancers for better clinical translation.

Selected Publications

Fane, M.E ,Yash Chhabra, Gretchen M. Alicea, Devon A. Maranto, Stephen M. Douglass, Marie R. Webster, Vito W. Rebecca, Gloria E. Marino, Filipe Almeida, Brett L. Ecker, Daniel J. Zabransky, Laura Hüser, Thomas Beer, Hsin-Yao Tang, Andrew Kossenkov, Meenhard Herlyn, David W. Speicher, Wei Xu, Xiaowei Xu, Elizabeth M. Jaffee, Julio A. Aguirre-Ghiso, & Ashani T. Weeraratna. Stromal Changes in The Aged Lung Induce an Emergence From Melanoma Dormancy. Nature. 2022 June 01. https://doi.org/10.1038/s41586-022-04774-2.

Fane ME, Chhabra Y, Spoerri L, Simmons JL, Ludwig R, Bonvin E, Goding CR, Sturm RA, Boyle GM, Haass NK, Piper M, Smith AG. Reciprocal Regulation of BRN2 and NOTCH1/2 Signaling Synergistically Drives Melanoma Cell Migration and Invasion. J Invest Dermatol. 2021 Dec 24;. doi: 10.1016/j.jid.2020.12.039. [Epub ahead of print] PubMed PMID: 34958806.

Fane ME, Ecker BL, Kaur A, Marino GE, Alicea GM, Douglass SM, Chhabra Y, Webster MR, Marshall A, Colling R, Espinosa O, Coupe N, Maroo N, Campo L, Middleton MR, Corrie P, Xu X, Karakousis GC, Weeraratna AT. sFRP2 Supersedes VEGF as an Age-related Driver of Angiogenesis in Melanoma, Affecting Response to Anti-VEGF Therapy in Older Patients. Clin Cancer Res. 2020 Nov 1;26(21):5709-5719. doi: 10.1158/1078-0432.CCR-20-0446. PubMed PMID: 33097493; PubMed Central PMCID: PMC7642114.

*Fane M, Weeraratna AT. How the ageing microenvironment influences tumour progression. Nat Rev Cancer. 2020 Feb;20(2):89-106. doi: 10.1038/s41568-019-0222-9. Epub 2019 Dec 13. Review. PubMed PMID: 31836838; PubMed Central PMCID: PMC7377404.

Webster MR, Fane ME, Alicea GM, Basu S, Kossenkov AV, Marino GE, Douglass SM, Kaur A, Ecker BL, Gnanapradeepan K, Ndoye A, Kugel C, Valiga A, Palmer J, Liu Q, Xu X, Morris J, Yin X, Wu H, Xu W, Zheng C, Karakousis GC, Amaravadi RK, Mitchell TC, Almeida FV, Xiao M, Rebecca VW, Wang YJ, Schuchter LM, Herlyn M, Murphy ME, Weeraratna AT. Paradoxical Role for Wild-Type p53 in Driving Therapy Resistance in Melanoma. Mol Cell. 2020 Feb 6;77(3):681. doi: 10.1016/j.molcel.2020.01.005. PubMed PMID: 32032511; PubMed Central PMCID: PMC7441646.

Douglass SM, Fane ME, Sanseviero E, Ecker BL, Kugel CH 3rd, Behera R, Kumar V, Tcyganov EN, Yin X, Liu Q, Chhabra Y, Alicea GM, Kuruvilla R, Gabrilovich DI, Weeraratna AT. Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity. Cancer Res. 2021 Feb 1;81(3):658-670. doi: 10.1158/0008-5472.CAN-20-1238. Epub 2020 Dec 1. PubMed PMID: 33262126; PubMed Central PMCID: PMC8330365.

Alicea GM, Rebecca VW, Goldman AR, Fane ME, Douglass SM, Behera R, Webster MR, Kugel CH 3rd, Ecker BL, Caino MC, Kossenkov AV, Tang HY, Frederick DT, Flaherty KT, Xu X, Liu Q, Gabrilovich DI, Herlyn M, Blair IA, Schug ZT, Speicher DW, Weeraratna AT. Changes in Aged Fibroblast Lipid Metabolism Induce Age-Dependent Melanoma Cell Resistance to Targeted Therapy via the Fatty Acid Transporter FATP2. Cancer Discov. 2020 Sep;10(9):1282-1295. doi: 10.1158/2159-8290.CD-20-0329. Epub 2020 Jun 4. PubMed PMID: 32499221; PubMed Central PMCID: PMC7483379.

Torre EA, Arai E, Bayatpour S, Jiang CL, Beck LE, Emert BL, Shaffer SM, Mellis IA, Fane ME, Alicea GM, Budinich KA, Weeraratna AT, Shi J, Raj A. Genetic screening for single-cell variability modulators driving therapy resistance. Nat Genet. 2021 Jan;53(1):76-85. doi: 10.1038/s41588-020-00749-z. Epub 2021 Jan 4. PubMed PMID: 33398196; PubMed Central PMCID: PMC7796998.

Dardani I, Emert BL, Goyal Y, Jiang CL, Kaur A, Lee J, Rouhanifard SH, Alicea GM, Fane ME, Xiao M, Herlyn M, Weeraratna AT, Raj A. ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ. Nature Methods. 2022;19(11):1403-10. doi: 10.1038/s41592-022-01653-6.

Fane ME, Chhabra Y, Hollingsworth DEJ, Simmons JL, Spoerri L, Oh TG, Chauhan J, Chin T, Harris L, Harvey TJ, Muscat GEO, Goding CR, Sturm RA, Haass NK, Boyle GM, Piper M, Smith AG. NFIB Mediates BRN2 Driven Melanoma Cell Migration and Invasion Through Regulation of EZH2 and MITF. EBioMedicine. 2017 Feb;16:63-75. doi: 10.1016/j.ebiom.2017.01.013. Epub 2017 Jan 16. PubMed PMID: 28119061; PubMed Central PMCID: PMC5474438.

Kugel CH 3rd, Douglass SM, Webster MR, Kaur A, Liu Q, Yin X, Weiss SA, Darvishian F, Al-Rohil RN, Ndoye A, Behera R, Alicea GM, Ecker BL, Fane M, Allegrezza MJ, Svoronos N, Kumar V, Wang DY, Somasundaram R, Hu-Lieskovan S, Ozgun A, Herlyn M, Conejo-Garcia JR, Gabrilovich D, Stone EL, Nowicki TS, Sosman J, Rai R, Carlino MS, Long GV, Marais R, Ribas A, Eroglu Z, Davies MA, Schilling B, Schadendorf D, Xu W, Amaravadi RK, Menzies AM, McQuade JL, Johnson DB, Osman I, Weeraratna AT. Age Correlates with Response to Anti-PD1, Reflecting Age-Related Differences in Intratumoral Effector and Regulatory T-Cell Populations. Clin Cancer Res. 2018 Nov 1;24(21):5347-5356. doi: 10.1158/1078-0432.CCR-18-1116. Epub 2018 Jun 13. PubMed PMID: 29898988; PubMed Central PMCID: PMC6324578.

Ecker BL, Kaur A, Douglass SM, Webster MR, Almeida FV, Marino GE, Sinnamon AJ, Neuwirth MG, Alicea GM, Ndoye A, Fane M, Xu X, Sim MS, Deutsch GB, Faries MB, Karakousis GC, Weeraratna AT. Age-Related Changes in HAPLN1 Increase Lymphatic Permeability and Affect Routes of Melanoma Metastasis. Cancer Discov. 2019 Jan;9(1):82-95. doi: 10.1158/2159-8290.CD-18-0168. Epub 2018 Oct 2. PubMed PMID: 30279172; PubMed Central PMCID: PMC6328344.

Kaur A, Ecker BL, Douglass SM, Kugel CH 3rd, Webster MR, Almeida FV, Somasundaram R, Hayden J, Ban E, Ahmadzadeh H, Franco-Barraza J, Shah N, Mellis IA, Keeney F, Kossenkov A, Tang HY, Yin X, Liu Q, Xu X, Fane M, Brafford P, Herlyn M, Speicher DW, Wargo JA, Tetzlaff MT, Haydu LE, Raj A, Shenoy V, Cukierman E, Weeraratna AT. Remodeling of the Collagen Matrix in Aging Skin Promotes Melanoma Metastasis and Affects Immune Cell Motility. Cancer Discov. 2019 Jan;9(1):64-81. doi: 10.1158/2159-8290.CD-18-0193. Epub 2018 Oct 2. PubMed PMID: 30279173; PubMed Central PMCID: PMC6328333.

Fane ME, Chhabra Y, Smith AG, Sturm RA. BRN2, a POUerful driver of melanoma phenotype switching and metastasis. Pigment Cell Melanoma Res. 2019 Jan;32(1):9-24. doi: 10.1111/pcmr.12710. Epub 2018 Jun 5. Review. PubMed PMID: 29781575